A = original articles in peer-reviewed journals
B = books, chapters, reviews or perspectives articles
2024
A135. Benabou S, de Juan A, Gabelica V, "Probing the Intramolecular Folding of Nucleic Acids with Native Ion Mobility Mass Spectrometry: Strategies and Caveats", ChemRxiv (May 31, 2024), https://doi.org/10.26434/chemrxiv-2024-80r5m
A134. Juribašić Kulcsár M, Gabelica V, Plavec J., “Solution-state structure of a long-loop G-quadruplex formed within promoters of plasmodium falciparum B var genes”, Chem. Eur. J. (2024) e202401190.
A133.* Guzmán-Lorite M, Rosu F, Marina ML, García MC, Gabelica V., “miRNA and DNA analysis by negative ion electron transfer dissociation and infrared multiple-photon dissociation mass spectrometry”, Anal. Chim. Acta (2024) 1299:342431.
A132. Di Carluccio C, Cerofolini L, Moreira M, Rosu F, Padilla-Cortés Luis, Gheorghita G R, Xu Z, Santra A, Yu H, Yokoyama S, Gray T E, St. Laurent C D, Manabe Y, Chen X, Fukase H, Macauley MS, Molinaro A, Li T, Bensing BA, Marchetti R, Gabelica V, Fragai M, Silipo A., “Molecular Insights into O-Linked Sialoglycans Recognition by the Siglec-Like SLBR-N (SLBRUB10712) of Streptococcus gordonii”, ACS Cent. Sci. (2024), 10: 447-459.
2023
A131. Pounot K, Piersson C, Goring AK, Rosu F, Gabelica V, Weik M, Han S, Fichou Y. “Mutations in Tau Protein Promote Aggregation by Favoring Extended Conformations”, JACS Au (2023) 4: 92-100.
A130. Guillon J, Le Borgne M, Milano V, Guédin-Beaurepaire A, Moreau S, Pinaud N, Ronga L, Savrimoutou S, Albenque-Rubio S, Marchivie M, Kalout H, Walker C, Chevallier L, Buré C, Largy E, Gabelica V, Mergny JL, Baylot V, Ferrer J, Idrissi Y, Chevret E, Cappellen D, Desplat V, Schelz Z, Zupkó I. “New 2,4-bis[(substituted-aminomethyl)phenyl]phenylquinazoline and 2,4-bis[(substituted-aminomethyl)phenyl]phenylquinoline Derivatives: Synthesis and Biological Evaluation as Novel Anticancer Agents by Targeting G-Quadruplex”, Pharmaceuticals (2023) 17: 30.
A129*. Largy E, Ranz M, Gabelica V. “A General Framework to Interpret Hydrogen-Deuterium Exchange Native Mass Spectrometry of G-Quadruplex DNA”, J. Am. Chem. Soc. (2023) 145: 26843-26857.
A128. Tran VT, Turek-Herman J, Ferreira M, Martin KN, Beseiso D, Williams BR, Rosu F, Gabelica V, Burgmayer SJN, Yatsunyk LA. “Interactions of ruthenium(II) polypyridyl complexes with human telomeric DNA”, J. Inorg. Biochem. (2023) 249: 112388.
A127.* Khristenko N, Rosu F, Largy E, Haustant J, Mesmin C, Gabelica V. “Native Electrospray Ionization of Multi-Subunit Therapeutic Proteins via a Bead Ejection Model”, J. Am. Chem. Soc. (2023) 145(1), 498-506.
A126. Reznichenko O, Leclercq D, Pinto JF, Mouawad L, Gabelica V, Granzhan A. “Optimization of G-Quadruplex Ligands through a SAR Study Combining Parallel Synthesis and Screening of Cationic Bis(acylhydrazones)”, Chem. Eur. J. (2023), 29(4), e202202427.
2022
B22.* Largy, E.; König, A.; Ghosh, A.; Ghosh, D.; Benabou, S.; Rosu, F.; Gabelica, V. “Mass Spectrometry of Nucleic Acid Noncovalent Complexes” Chem. Rev. (2022), 122(8), 7720-7839.
B21.* Gabelica, V. “Ion Mobility -Mass Spectrometry: An Overview”, Chapter 1 in “Ion Mobility-Mass Spectrometry”, Ashcroft, A. and Sobott, F, Eds., RSC (2022), pp. 1-25.
A125. Guillon J, Cohen A, Boudot C, Monic S, Savrimoutou S, Moreau S, Albenque-Rubio S, Lafon-Schmaltz C, Dassonville-Klimpt A, Mergny JL, Ronga L, Bernabeu de Maria M, Lamarche J, Lago CD, Largy E, Gabelica V, Moukha S, Dozolme P, Agnamey P, Azas N, Mullié C, Courtioux B, Sonnet P. “Design, Synthesis, and Antiprotozoal Evaluation of New Promising 2,9- Bis[(substituted-aminomethyl)]-4,7-phenyl-1,10-phenanthroline Derivatives, a Potential Alternative Scaffold to Drug Efflux”, Pathogens (2022) 11(11), 1339.
A124. Yoo SY, Buratto J, Roy A, Morvan E, Pasco M, Pulka-Ziach K, Lombardo CM, Rosu F, Gabelica V, Mackereth CD, Collie GW, Guichard G. “Adaptive Binding of Alkyl Glycosides by Non-peptidic Helix Bundles in Water: Toward Artificial Glycolipid Binding Proteins”, J. Am. Chem. Soc. (2022) 144(35), 15988-15998.
A123.* Ghosh A, Trajkovski M, Teulade-Fichou MP, Gabelica V, Plavec J. “Phen-DC3 Induces Refolding of Human Telomeric DNA into a Chair-type Antiparallel G-quadruplex with Ligand Intercalation”, Angew. Chem. Int. Ed. (2022) 61(40), e202207384.
A122.* Ghosh D, Rosu F, Gabelica V. “Negative Electrospray Supercharging Mechanisms of Oligonucleotide Single Strands and G-quadruplexes”, Anal. Chem. (2022), 94(44), 15386-15394.
A121. Saintmont F, Hoyas S, Rosu F, Gabelica V, Brocorens P, Gerbaux P. “Structural Characterization of Dendriplexes In Vacuo: A Joint Ion Mobility/Molecular Dynamics Investigation”, J. Am. Soc. Mass Spectrom. (2022), 33(8), 1555-1568.
A120. Meier D, Schoof B, Wang J, Li X, Walz A, Huettig A, Schlichting H, Rosu F, Gabelica V, Maurizot V, Reichert J, Papageorgiou AC, Huc I, Barth JV, “Structural adaptations of electrosprayed aromatic oligoamide foldamers on Ag(111)”, Chem. Commun. (2022), 58, 8938-8941.
A119. Hupin S, Tognetti V, Rosu F, Renaudineau S, Proust A, Izzet G, Gabelica V, Afonso C, Lavanant H, “Lennard-Jones interaction parameters of Mo and W in He and N2 from collision cross-sections of Lindqvist and Keggin polyoxometalate anions”, Phys. Chem. Chem. Phys. (2022) 24(26), 16156-16166.
A118. Meier-Stephenson FS, Meier-Stephenson VC, Carter MD, Meek AR, Wang Y, Pan L, Chen Q, Jacobo S, Wu F, Lu E, Simms GA, Fisher L, McGrath AJ, Fermo V, Barden CJ, Clair HDS, Galloway TN, Yadav A, Campágna-Slater V, Hadden M, Reed M, Taylor M, Kelly B, Diez-Cecilia E, Kolaj I, Santos C, Liyanage I, Sweeting B, Stafford P, Boudreau R, Reid GA, Noyce RS, Stevens L, Staniszewski A, Zhang H, Murty MRVS, Lemaire P, Chardonnet S, Richardson CD, Gabelica V, DePauw E, Brown R, Darvesh S, Arancio O, Weaver DF. “Alzheimer's disease as an autoimmune disorder of innate immunity endogenously modulated by tryptophan metabolites”, Alzheimers Dement. (N Y). (2022) 8(1), e12283.
2021
A117. Belmonte-Reche E, Benassi A, Peñalver P, Cucchiarini A, Guédin A, Mergny JL, Rosu F, Gabelica V, Freccero M, Doria F, Morales JC. “Thiosugar naphthalene diimide conjugates: G-quadruplex ligands with antiparasitic and anticancer activity”, Eur. J. Med. Chem. (2022) 232, 114183. B20.* Gabelica, V. “Native Mass Spectrometry and Nucleic Acid G-quadruplex Biophysics - Advancing Hand in Hand”, Acc. Chem. Res. (2021), 54(19), 3691-3699.
A116. Collie GW, Lombardo CM, Yo SH, Pulka-Ziach K, Gabelica V, Mackereth CD, Rosu F, Guichard G. “Crystal structures capture multiple stoichiometric states of an aqueous self-assembling oligourea foldamer”, Chem. Commun. (2021), 57, 9514-9517.
A115. Winnerdy FR, Bakalar B, Das P, Heddi B, Marchand A, Rosu F, Gabelica V, Phan AT. “Unprecedented hour-long residence time of a cation in a left-handed G-quadruplex” Chem. Sci. (2021) 12(20), 7151-7157.
A114. Guillon J, Denevault-Sabourin C, Chevret E, Brachet-Botineau M, Milano V, Guédin-Beaurepaire A, Moreau S, Ronga L, Savrimoutou S, Rubio S, Ferrer J, Lamarche J, Mergny JL, Viaud-Massuard MC, Ranz M, Largy E, Gabelica V, Rosu F, Gouilleux F, Desplat V. “Design, synthesis, and antiproliferative effect of 2,9-bis[4-(pyridinylalkylaminomethyl)phenyl]-1,10-phenanthroline derivatives on human leukemic cells by targeting G-quadruplex”, Arch. Pharm. (2021) 354(8), 2000450. https://doi.org/10.1002/ardp.202000450
A113.* Ghosh A, Largy E, Gabelica V., “DNA G-quadruplexes for native mass spectrometry in potassium: a database of validated structures in electrospray-compatible conditions”, Nucleic Acids Res. (2021) 49, 2333-2345.
A112. Reznichenko O, Cucchiarini A, Gabelica V, Granzhan A., “Quadruplex DNA-guided ligand selection from dynamic combinatorial libraries of acylhydrazones”, Org Biomol Chem. (2021) 19, 379-386.
2020
B19. Allison, T.; Barran, P.; Cianferani, S.; Degiacomi, M.; Gabelica, V.; Grandori, R.; Marklund, E.; Menneteau, T.; Migas, L.; Politis, A.; Sharon, M.; Sobott, F.; Thalassinos, K.; Benesch, J. L. “Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology”. Anal. Chem. (2020) 92(16), 10872–10880.
B18. Allison, T.; Barran, P.; Benesch, J. L.; Cianferani, S.; Degiacomi, M.; Gabelica, V.; Grandori, R.; Marklund, E.; Menneteau, T.; Migas, L.; Politis, A.; Sharon, M.; Sobott, F.; Thalassinos, K. "Software for the Analysis and Interpretation of Native Mass Spectrometry Data". Anal. Chem. (2020) 92(16), 10881–10890.
A111. Ceschi S, Largy E, Gabelica V, Sissi C., “A two-quartet G-quadruplex topology of human KIT2 is conformationally selected by a perylene derivative”, Biochimie (2020) 179, 77-84.
A110.* Abi-Ghanem J, Rabin C, Porrini M, Rosu F, Gabelica V., “Compaction of RNA Hairpins and Their Kissing Complexes in Native Electrospray Mass Spectrometry”, J. Am. Soc. Mass Spectrom. (2020) 31, 2035-2043.
A109. Morsa D, Hanozin E, Eppe G, Quinton L, Gabelica V, De Pauw E., “Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry”, Anal. Chem. (2020) 92, 4573-4582. A109b. Morsa D, Hanozin E, Eppe G, Quinton L, Gabelica V, De Pauw E., “Response to Comment on Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry”, Anal. Chem. (2020) 92, 16334-16337.
A107. Calabrese V., Lavanant H., Rosu F., Gabelica V., Afonso C., “Collision cross sections of phosphoric acid cluster anions in helium measured by drift tube ion mobility mass spectrometry”, J. Am. Soc. Mass Spectrom. (2020) 31, 969.
A106.* Largy E, Gabelica V, “Native Hydrogen/Deuterium Exchange Mass Spectrometry of Structured DNA Oligonucleotides”, Anal. Chem. (2020) 92(6), 4402-4410.
2019
B17.* Gabelica V, Afonso C, Barran P, Benesch JL, Bleiholder C, Bowers MT, Bilbao A, Bush MF, Campbell JL, Campuzano IDG, Causon TJ, Clowers BH, Creaser C, De Pauw E, Far J, Fernandez-Lima F, Fjeldsted JC, Giles K, Groessl M, Hogan CJ Jr, Hann S, Kim HI, Kurulugama RT, May JC, McLean JA, Pagel K, Richardson K, Ridgeway ME, Rosu F, Sobott F, Shvartsburg AA, Thalassinos K, Valentine SJ, Wyttenbach T, “Recommendations for Reporting Ion Mobility Mass Spectrometry Measurements” Mass Spectrom. Rev. (2019), 38(3), 291-320.
A105.* D’Atri V, Gabelica V, “DNA and RNA telomeric G-quadruplexes: what topology features can be inferred from ion mobility mass spectrometry?”, Analyst (2019) 144, 6074-6088.
A104.* Khristenko N, Amato J, Livet S, Pagano B, Randazzo A, Gabelica V, “Native Ion Mobility Mass Spectrometry: When Gas-Phase Ion Structures Depend on the Electrospray Charging Process”, J. Am. Soc. Mass Spectrom. (2019), 30(6), 1069-1081. DOI: 10.1007/s13361-019-02152-3.
A103.* Daly S, Rosu F, Porrini M, Gabelica V, “Electronic spectroscopy of isolated nucleic acid polyanions”, Faraday Discuss. (2019), 217, 361-382, DOI: 10.1039/C8FD00207J.
A102.* Paul D, Marchand A, Verga D, Teulade-Fichou MP, Bombard S, Rosu F, Gabelica V, “Probing ligand and cation binding sites in G-quadruplex nucleic acids by mass spectrometry and electron photodetachment dissociation sequencing”, Analyst (2019) 144, 3518-3524.
2018
B16.* Gabelica V, Marklund E. “Fundamentals of ion mobility spectrometry”, Curr. Opin. Chem. Biol. (2018) 42: 51-59.
A101.* Swasey SM, Rosu F, Copp SM, Gabelica V, Gwinn EG. “Parallel Guanine Duplex and Cytosine Duplex DNA with Uninterrupted Spines of AgI-Mediated Base Pairs”, J. Phys. Chem. Lett. (2018) 9(22):6605-6610.
A100. Asakawa D, Miyazato A, Rosu F, Gabelica V. “Influence of the metals and ligands in dinuclear complexes on phosphopeptide sequencing by electron-transfer dissociation tandem mass spectrometry”, Phys. Chem. Chem. Phys. (2018) 20(41):26597-26607.
A99.* Marchand A, Rosu F, Zenobi R, Gabelica V. “Thermal Denaturation of DNA G-Quadruplexes and Their Complexes with Ligands: Thermodynamic Analysis of the Multiple States Revealed by Mass Spectrometry”, J. Am. Chem. Soc. (2018) 140(39):12553-12565.
A98. Sedghi Masoud S, Yamaoki Y, Ma Y, Marchand A, Winnerdy FR, Gabelica V, Phan AT, Katahira M, Nagasawa K. “Analysis of Interactions between Telomeric i-Motif DNA and a Cyclic Tetraoxazole Compound”, ChemBioChem (2018) 19(21):2268-2272.
A97.* Gabelica V, Livet S, Rosu F. “Optimizing Native Ion Mobility Q-TOF in Helium and Nitrogen for Very Fragile Noncovalent Structures”, J. Am. Soc. Mass Spectrom. (2018) 29(11):2189-2198.
A96. Zuffo M, Guédin A, Leriche ED, Doria F, Pirota V, Gabelica V, Mergny JL, Freccero M. “More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand”, Nucleic Acids Res. (2018) 46(19):e115.
2017
A95.* Marchand A, Livet S, Rosu F, Gabelica V. “Drift Tube Ion Mobility: How to Reconstruct Collision Cross Section Distributions from Arrival Time Distributions?”, Anal. Chem. (2017) 89(23): 12674-12681.
A94.* Abi-Ghanem J, Rabin C, Porrini M, Dausse E, Toulmé JJ, Gabelica V. “Electrostatics Explains the Position-Dependent Effect of G⋅U Wobble Base Pairs on the Affinity of RNA Kissing Complexes” ChemPhysChem (2017) 18(19): 2782-2790.
A93. Zhou J, Amrane S, Rosu F, Salgado GF, Bian Y, Tateishi-Karimata H, Largy E, Korkut DN, Bourdoncle A, Miyoshi D, Zhang J, Ju H, Wang W, Sugimoto N, Gabelica V, Mergny JL. “Unexpected Position-dependent Effects of Ribose G-quartets in G-quadruplexes”, J. Am. Chem. Soc. (2017) 139(23): 7768–7779.
A92.* Porrini M, Rosu F, Rabin C, Darré L, Gomez H, Orozco M, Gabelica V. “Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry”, ACS Cent. Sci. (2017), 3(5), 454-461.
A91.* Lecours MJ, Marchand A, Anwar A, Guetta C, Hopkins WS, Gabelica V, “What stoichiometries determined by mass spectrometry reveal about the ligand binding mode to G-quadruplex nucleic acids”, Biochim Biophys Acta (BBA) - General Subjects (2017) 1861(5 Pt B): 1353-1361.
A90. Gueddouda NM, Hurtado MR, Moreau S, Ronga L, Das RN, Savrimoutou S, Rubio S, Marchand A, Mendoza O, Marchivie M, Elmi L, Chansavang A, Desplat V, Gabelica V, Bourdoncle A, Mergny JL, Guillon J., “Design, Synthesis, and Evaluation of 2,9-Bis[(substituted-aminomethyl)phenyl]-1,10-phenanthroline Derivatives as G-Quadruplex Ligands.” ChemMedChem (2017) 12(2): 146-160.
2016
B15.* E. Largy, J.-L. Mergny, V. Gabelica, “Role of Alkali Metal Ions in G-Quadruplex Nucleic Acid Structure and Stability”, Met. Ions Life Sci. (2016) 16: 203-258. (book chapter)
B14.* V. Gabelica, “Jeroen Kool and Wilfried M. A. Niessen (Eds.): Analyzing biomolecular interactions by mass spectrometry”, Anal. Bioanal. Chem. (2016) 408: 6515-6516. (book review)
A89.* A. Marchand, V. Gabelica, “Folding and misfolding pathways of G-quadruplex DNA”, Nucleic Acids Res. (2016), 44(22): 10999-11012.
A88. C.M. Lombardo, G.W. Collie, K. Pulka-Ziach, F. Rosu, V. Gabelica, C.D. Mackereth, G. Guichard, “Anatomy of an oligourea six-helix bundle”, J. Am. Chem. Soc. (2016) 138: 10522-10530.
A87.* K.V. Diveshkumar, S. Sakrikar, F. Rosu, S. Harikrishna, V. Gabelica, Pradeepkumar PI, “Specific Stabilization of c-MYC and c-KIT G-Quadruplex DNA Structures by Indolylmethyleneindanone Scaffolds”, Biochemistry (2016), 55: 3571-3585.
A86.* A. Marchand, D. Strzelecka, V. Gabelica, “Selective and Cooperative Ligand Binding to Antiparallel Human Telomeric DNA G-Quadruplexes”, Chem. Eur. J. (2016) 22: 9551-9555.
A85. V. Romanucci, A. Marchand, O. Mendoza, D. D’Alonzo, A. Zarrelli, V. Gabelica, G. Di Fabio, “Kinetic ESI-MS Studies of Potent Anti-HIV Aptamers Based on the G-Quadruplex Forming Sequence d(TGGGAG)”, ACS Med. Chem. Lett. (2016) 7: 256-260.
A84. E. Largy, A. Marchand, S. Amrane, V. Gabelica, J.-L. Mergny, “Quadruplex Turncoats: Cation-Dependent Folding and Stability of Quadruplex-DNA Double Switches”, J. Am. Chem. Soc. (2016) 138: 2780-2792.
2015
B13.* V. D’Atri, M. Porrini, F. Rosu, V. Gabelica, “Linking molecular models with ion mobility experiments. Illustration with a rigid nucleic acid structure”, J. Mass Spectrom. (2015), 50(5), 711-726 (issue cover).
A83. G.W. Collie, K. Pulka-Ziach, C.M. Lombardo, J. Fremaux, F. Rosu , M. Decossas, L. Mauran, O. Lambert, V. Gabelica, C.D. Mackereth, G. Guichard, “Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation”, Nature Chem. (2015) 7(11), 871-878.
A82. M. Garavis, N. Escaja, V. Gabelica, A. Villasante, C. Gonzalez, “Centromeric alpha-satellite DNA adopts dimeric i-motif structures capped by AT Hoogsteen base pairs”, Chem. Eur. J. (2015), 21(27), 9816-9824.
A81. M. Garavís, M. Méndez-Lago, V. Gabelica, S. Whitehead, C. González, A. Villasante, “The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs”, Sci. Reports (2015), 5, 13307.
A80. O. Mendoza, M. Porrini, G.F. Salgado, V. Gabelica, J.L. Mergny, “Orienting tetramolecular G-quadruplex formation: the quest for the elusive RNA antiparallel quadruplex”, Chem. Eur. J. (2015) 21(18), 6732-6739.
A79.* A. Marchand, A. Granzhan, K. Iida, Y. Tsushima, Y. Ma, K. Nagasawa, M.-P. Teulade-Fichou, V. Gabelica, “Ligand-Induced Conformational Changes with Cation Ejection upon Binding to Human Telomeric DNA G-Quadruplexes”, J. Am. Chem. Soc. (2015), 137(2), 750-756.
A78. A. Arcella, J. Dreyer, E. Ippoliti, I. Ivani, G. Portella, V. Gabelica, P. Carloni, M. Orozco, “Structure and dynamics of oligonucleotides in the gas phase”, Angew. Chem. Int. Ed. (2015), 54(2), 467-471.
2014
B12.* V. Gabelica, Editor. (2014) “Nucleic Acids in the Gas Phase”. Springer-Verlag series “Physical Chemistry in Action”, 287 pages, 142 illustrations, Springer-Verlag, Berlin Heidelberg. (ISBN : 978-3-642-54841-3).
B11.* Gabelica, V. (2014) “Introduction: nucleic acids structure, function, and why studying them in vacuo”, in: Nucleic Acids in the Gas Phase, Gabelica V., editor, Springer-Verlag, Berlin Heidelberg, pp. 3-20.
B10.* V. Gabelica and F. Rosu (2014) “Gas-phase spectroscopy of nucleic acids”, in: Nucleic Acids in the Gas Phase, Gabelica V., editor, Springer-Verlag, Berlin Heidelberg, pp. 103-130.
B9.* J. Zhou, F. Rosu, S. Amrane, D.N. Korkut, V. Gabelica, J.L. Mergny, “Assembly of chemically modified G-rich sequences into tetramolecular DNA G-quadruplexes and higher order structures”, Methods (2014) 67, 159-168.
B8.* V. Gabelica, Commentary: “A pilgrim's guide to G-quadruplex nucleic acid folding”, Biochimie (2014) 105, 1-3.
B7.* J. Abi-Ghanem and V. Gabelica, “Nucleic acid ion structures in the gas phase”, Phys. Chem. Chem. Phys. (2014) 16, 21204-21218.
A76. D. Morsa, V. Gabelica, E. De Pauw, “Fragmentation and Isomerization Due to Field Heating in Traveling Wave Ion Mobility Spectrometry”, J. Am. Soc. Mass Spectrom. (2014) 25(8), 1384-1393.
A75. M. Malgowska, D. Gudanis, R. Kierzek, E. Wyszko, V. Gabelica, Z. Gdaniec, “Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats”, Nucleic Acids Res. (2014) 42, 10196-10207.
A74.* A. Marchand, V. Gabelica, “Native Electrospray Mass Spectrometry of DNA G-Quadruplexes in Potassium Solution”, J. Am. Soc. Mass Spectrom. (2014) 25, 1146-1154.
A73. S. Ghosh, O. Mendoza, L. Cubo, F. Rosu, V. Gabelica, A.J. White, R. Vilar, “Assembly of palladium(II) and platinum(II) metallo-rectangles with a guanosine-substituted terpyridine and study of their interactions with quadruplex DNA”, Chem. Eur. J. (2014) 20, 4772-4779.
A72. V. D'Atri, N. Borbone, J. Amato, V. Gabelica, S. D'Errico, G. Piccialli, L. Mayol, G. Oliviero, “DNA-based nanostructures: The effect of the base sequence on octamer formation from d(XGGYGGT) tetramolecular G-quadruplexes”, Biochimie (2014) 99, 119-128.
A71. A. Avino, G. Portella, R. Ferreira, R. Gargallo, S. Mazzini, V. Gabelica, M. Orozco, R. Eritja, “Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures”, FEBS J. (2014) 281(4), 1085-1099.
2013
B6. T. Meyer, V. Gabelica, H. Grubmüller, M. Orozco, “Proteins in the Gas Phase”, WIREs Comput. Mol. Sci. (2013), 3, 408-425.
A70.* A. Marchand, R. Ferreira, H. Tateishi-Karimata, D. Miyoshi, N. Sugimoto, V. Gabelica, "Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics", J. Phys. Chem. B (2013) 117, 12391-12401.
A69. P. Lemaire, D. Debois, N. Smargiasso, L. Quinton, V. Gabelica, E.A. De Pauw, “Use of 1,5-diaminonaphthalene to combine matrix-assisted laser desorption/ionization in-source decay fragmentation with hydrogen/deuterium exchange”, Rapid Commun. Mass Spectrom. (2013) 27, 1837-1846.
A68.* V. Gabelica, R. Maeda, T. Fujimoto, H. Yaku, T. Murashima, N. Sugimoto, D. Miyoshi, “Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex”, Biochemistry (2013) 52, 5620-5628.
A67. D. Delvaux, F. Kerff, M.R. Murty, B. Lakaye, J. Czerniecki, G. Kohn, P. Wins, R. Herman, V. Gabelica, F. Heuze, X. Tordoir, R. Maree, A. Matagne, P. Charlier, E. De Pauw, L. Bettendorff, “Structural determinants of specificity and catalytic mechanism in mammalian 25-kDa thiamine triphosphatase”, Biochim. Biophys. Acta (2013) 1830, 4513-4523.
A66. A. Burmistrova, V. Gabelica, A.S. Duwez, E. De Pauw, “Ion mobility spectrometry reveals duplex DNA dissociation intermediates”, J. Am. Soc. Mass Spectrom. (2013), 24, 1777-1786.
A65.* F. Balthasart, J. Plavec, V. Gabelica, “Ammonium ion binding to DNA G-quadruplexes: do electrospray mass spectra faithfully reflect the solution-phase species?”, J. Am. Soc. Mass Spectrom. (2013), 24(1), 1-8. (issue cover)
1999-2012
B5. V. Gabelica, "Mass Spectrometry and Gas-Phase Chemistry of Non-Covalent Complexes, by Christoph A. Schalley and Andreas Springer, Authors D.M. Desiderio and N.M. Nibbering, Series Editors John Wiley and Sons, Inc. Hoboken, NJ ISBN: 978-0-470-13115-2 2009, Hardcover, 571 pages", J. Am. Soc. Mass Spectrom. (2012), 23(3), 570-571.
B4.* B. Pagano, S. Cosconati, V. Gabelica, L. Petraccone, S. De Tito, L. Marinelli, V. La Pietra, F. Saverio di Leva, I. Lauri, R. Trotta, E. Novellino, C. Giancola, A. Randazzo, “State-of-the-art methodologies for the discovery and characterization of DNA G-Quadruplex binders”, Curr. Pharm. Des. (2012), 18(14), 1880-1899.
A64. N.M. Smith, S. Amrane, F. Rosu, V. Gabelica, J.L. Mergny, “Mercury–thymine interaction with a chair type G-quadruplex architecture”, Chem. Commun. (2012), 48, 11464-11466.
A63. J. Zhou, A. Bourdoncle, F. Rosu, V. Gabelica, J.L. Mergny, "Tri-G-quadruplex: Controlled assembly of a G-quadruplex Structure from Three G-rich Strands”, Angew. Chem. Int. Ed. (2012), 51(44), 11002-11005. (selected by Faculty of 1000)
A62. F. Rosu, V. Gabelica, E. De Pauw, R. Antoine, M. Broyer, P. Dugourd, "UV Spectroscopy of DNA Duplex and Quadruplex Structures in the Gas Phase", J. Phys. Chem. A (2012) 116, 5383-5391.
A61.* L. Joly, F. Rosu, V. Gabelica, “d(TGnT) DNA sequences do not necessarily form tetramolecular G-quadruplexes”, Chem. Commun. (2012) 48, 8386-8388.
A60. R. Ferreira, M. Alvira, A. Aviñó, I. Gómez-Pinto, C. González, V. Gabelica, R. Eritja, “Synthesis and Structural Characterization of Stable Branched DNA G-Quadruplexes Using the Trebler Phosphoramidite”, ChemistryOPEN (2012), 1(2), 106-114.
A59.* R. Ferreira, A. Marchand, V. Gabelica, “Mass spectrometry and ion mobility spectrometry of G-quadruplexes. A study of solvent effects on dimer formation and structural transitions in the telomeric DNA sequence d(TAGGGTTAGGGT)”, Methods (2012), 57(1), 56-63.
A58. A. Arcella, G.Portella, M.L. Ruiz, R. Eritja, M. Vilaseca, V. Gabelica, M. Orozco, "The structure of triplex DNA in the gas phase”, J. Am. Chem. Soc. (2012), 134(15), 6596-6606.
A57. E. Largy, F. Hamon, F. Rosu, V. Gabelica, E. De Pauw, A. Guédin, J.-L. Mergny, M.-P. Teulade-Fichou, "Tridentate N-Donor Palladium(II) Complexes as Efficient Coordinating Quadruplex DNA Binders”, Chem. Eur. J. (2011), 17, 13274-13283.
A56. D. Delvaux, M.R.V.S. Murty, V. Gabelica, B. Lakaye, V.V. Lunin, T. Skarina, O. Onopriyenko, G. Kohn, P. Wins, E. De Pauw, L. Bettendorff, “A specific inorganic triphosphatase from Nitrosomonas europaea: structure and catalytic mechanism”, J. Biol. Chem. (2011), 286(39), 34023-34035.
A55.* N. Borbone, J. Amato, G. Oliviero, V. D’Atri, V. Gabelica, E. De Pauw, G. Piccialli, L. Mayol, "d(CGGTGGT) forms an octameric parallel G-quadruplex via stacking of unusual G(:C):G(:C):G(:C):G(:C) octads", Nucleic Acids Res. (2011), 39(17), 7848-7857.
A54.* D. Morsa, V. Gabelica, E. De Pauw, "Effective temperature of ions in traveling wave ion mobility spectrometry”, Anal. Chem. (2011), 83(14), 5775-5782.
A53. J. Amato, B. Pagano, N. Borbone, G. Oliviero, V. Gabelica, E. De Pauw, S. D'Errico, V. Piccialli, M. Varra, C. Giancola, G. Piccialli, L. Mayol, “Targeting G-Quadruplex Structure in the Human c-Kit Promoter with Short PNA Sequences”, Bioconj. Chem. (2011), 22(4), 654-663.
B3.* V. Gabelica, “Determination of equilibrium association constants of ligand-DNA complexes by electrospray mass spectrometry”, Methods Mol Biol. (2010), 613, 89-101.
A52. C.M. Lombardo, I.S. Martínez, S. Haider, V. Gabelica, E. De Pauw, J.E. Moses, S. Neidle, "Structure-based design of selective high-affinity telomeric quadruplex-binding ligands”, Chem. Commun. (2010), 46(48), 9116 - 9118.
A51. K. Demeure, V. Gabelica, E. De Pauw, "New Advances in the Understanding of the In-Source Decay Fragmentation of Peptides in MALDI-TOF-MS”, J. Am. Soc. Mass Spectrom. (2010), 21(11), 1906-1917.
A50. F. Rosu, V. Gabelica, L. Joly, G. Grégoire, E. De Pauw, "Zwitterionic i-motif structures are preserved in DNA negatively charged ions produced by electrospray mass spectrometry”, Phys. Chem. Chem. Phys. (2010), 12, 13448-13454.
A49.* F. Rosu, V. Gabelica, N. Smargiasso, G. Mazzucchelli, K. Shin-ya, E. De Pauw, "Cation involvement in telomestatin binding to G-quadruplex DNA", J. Nucleic Acid. (2010), 121259.
A48.* G.W. Collie, G.N. Parkinson, S. Neidle, F. Rosu, E. De Pauw, V. Gabelica, “Electrospray mass spectrometry of telomeric RNA (TERRA) reveals the formation of stable multimeric G-quadruplex structures”, J. Am. Chem. Soc. (2010), 132 (27), 9328–9334.
A47.* F. Rosu, V. Gabelica, H. Poncelet, E. De Pauw, "Tetramolecular G-quadruplex formation pathways studied by electrospray mass spectrometry”, Nucleic Acid. Res. (2010), 38(15), 5217-5225.
A46. G. Collie, A.P. Reszka, S.M. Haider, V. Gabelica, G.N. Parkinson, S. Neidle, “Selectivity in small molecule binding to human telomeric RNA and DNA quadruplexes”, Chem. Commun. (2009), 48, 7482-7484.
A45. N. Smargiasso, V. Gabelica, C. Damblon, F. Rosu, E. De Pauw, MP. Teulade-Fichou, JA. Rowe, A. Claessens, "Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes”, BMC Genomics (2009) 10, 362.
A44.* V. Gabelica, F. Rosu, E. De Pauw, "A Simple Method to Determine Electrospray Response Factors of Noncovalent Complexes", Anal. Chem., (2009), 81(16), 6708-6715.
A43. C. Kinet, V. Gabelica, D. Balbeur, E. De Pauw, "Electron detachment dissociation (EDD) pathways in oligodeoxynucleotides", Int. J. Mass Spectrom., (2009), 283: 206-213.
A42.* J. Amato, G. Oliviero, E. De Pauw, V. Gabelica, “Hybridization of Short Complementary PNAs to G-Quadruplex Forming Oligonucleotides: an Electrospray Mass Spectrometry Study”, Biopolymers, (2009), 91(4), Special Issue “Advances in the Investigation of Nucleic Acids and Nucleic Acid Assemblies”, 244-255.
B2.* F. Rosu, E. De Pauw, V. Gabelica, "Electrospray Mass Spectrometry to Study Drug-Nucleic Acid Interactions", Biochimie (2008), 90(7), Special issue "Targeting DNA Part I", 1074-1087.
A41. G.D. Mazzucchelli , V. Gabelica , N. Smargiasso , M. Fleron , W. Ashimwe , F. Rosu , MC. De Pauw-Gillet , JF. Riou, E. De Pauw, “Proteome alteration induced by hTERT transfection of human fibroblast cells”, Proteome Sci. (2008), 6:12.
A40. M. Bahr, V. Gabelica, A. Granzhan, E. Weinhold, M.P. Teulade-Fichou, “Selective recognition of pyrimidine-pyrimidine DNA mismatches by distance-constrained macrocycle bisintercalators”, Nucleic Acids Res. (2008), 36, 5000-5012.
A39.* N. Smargiasso, F. Rosu, W. Hsia, P. Colson, E.S. Baker, M.T. Bowers, E. De Pauw, V. Gabelica, “G-Quadruplex DNA Assemblies: Loop Length, Cation Identity and Multimer Formation”, J. Am. Chem. Soc. (2008), 130(31), 10208-10216.
A38. D. Monchaud, C. Allain, H. Bertrand, N. Smargiasso, F. Rosu, V. Gabelica, A. De Cian, J.-L. Mergny, and M.-P. Teulade-Fichou, "Ligands playing musical chairs with G-quadruplex DNA: A rapid and simple displacement assay for identifying selective G-quadruplex binders", Biochimie (2008), 90(8), Special issue "Targeting DNA Part II", 1207-1223.
A37.* V. Gabelica, F. Rosu, E. De Pauw, J. Lemaire, J.C. Gillet, J.C. Poully, F. Lecomte, G. Grégoire, J.P. Schermann, C. Desfrançois, "Infrared signature of DNA G-Quadruplexes in the gas phase", J. Am. Chem. Soc. (2008), 130(6), 1810-1811.
A36. F. Rosu, V. Gabelica, E. De Pauw, P. Mailliet, J.L. Mergny, "Cooperative 2:1 binding of a bisphenothiazine to duplex DNA", ChemBioChem (2008), 9, 849-852.
A35.* V. Gabelica, F. Rosu, E. De Pauw, R. Antoine, T. Tabarin, M. Broyer, P. Dugourd, "Electron Photodetachment Dissociation of DNA Anions with Covalently or Noncovalently Bound Chromophores", J. Am. Soc. Mass Spectrom. (2007), 18, 1990-2000.
A34. K. Demeure, L. Quinton, V. Gabelica, E. De Pauw, "Rational Selection of the Optimum MALDI Matrix for Top-down Proteomics by In-Source Decay", Anal. Chem. (2007), 79(22), 8678-8685.
A33. L. Quinton, K. Demeure, R. Dobson, N. Gilles, V. Gabelica, E. De Pauw, "New method for characterizing highly disulfide-bridged peptides in complex mixtures: Application to toxin identification from crude venoms', J. Proteome Res. (2007), 6(8), 3216-3223.
A32. J. Gros, F. Rosu, S. Amrane, A. De Cian, V. Gabelica, L. Lacroix, J.-L. Mergny, "Guanines are a quartet’s best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes", Nucleic Acids Res. (2007), 35, 3064-3075.
A31.* F. Rosu, C.-H. Nguyen, E. De Pauw, V. Gabelica, "Ligand binding mode to duplex and triplex DNA assessed by combining electrospray tandem mass spectrometry and molecular modeling", J. Am. Soc. Mass Spectrom. (2007), 18(6), 1052-1062. (issue cover)
A30.* V. Gabelica, F. Rosu, T. Tabarin, C. Kinet, R. Antoine, M. Broyer, E. De Pauw, P. Dugourd, "Base-Dependent Electron Photodetachment from Negatively Charged DNA Strands upon 260-nm Laser Irradiation", J. Am. Chem. Soc. (2007), 129, 4706-4713.
A29.* V. Gabelica, E.S. Baker, M.P. Teulade-Fichou, E. De Pauw, M.T. Bowers, "Stabilization and Structure of Telomeric and c-myc Region Intramolecular G-Quadruplexes: The Role of Central Cations and Small Planar Ligands", J. Am. Chem. Soc. (2007), 129, 895-904.
A28.* V. Gabelica, T. Tabarin, R. Antoine, F. Rosu, I. Compagnon, M. Broyer, E. De Pauw, P. Dugourd, "Electron Photodetachment Dissociation of DNA Polyanions in a Quadrupole Ion Trap Mass Spectrometer", Anal. Chem. (2006), 78, 6564-6572.
A27. A. Louati, J. Spraula, V. Gabelica, P. Kuhn, D. Matt, "Electrochemical study of two tris-O-substituted calix[4]arenes: 25,27-Dipropoxy-26-hydroxy-28-benzoyloxycalix[4]arene(partial cone) and 25,27-dibenzyl-26-hydroxy-28-benzoyloxy-calix[4]arene(partial cone). Electrosynthesis of the corresponding calix[4]arene-monoquinones" Electrochem. Commun. (2006), 8(5), 761-766.
A26. E.S. Baker, S.L. Bernstein, V. Gabelica, E. De Pauw, M.T. Bowers, "G-Quadruplexes in Telomeric Repeats Are Conserved in a Solvent-Free Environment", Int. J. Mass Spectrom. (2006), 253(3) Special Issue "Solution vs. Gas Phase Biomolecule Structure", 225-237.
A25. F. Rosu, S. Pirotte, E. De Pauw, V. Gabelica, "Positive and Negative ion Mode ESI-MS and MS/MS for Studying Drug-DNA Complexes", Int. J. Mass Spectrom. (2006), 253(3) Special Issue "Solution vs. Gas Phase Biomolecule Structure", 156-171.
A24. E. Schultz, M. Karas, F. Rosu, V. Gabelica, "Influence of the Matrix on Analyte Fragmentation in Atmospheric Pressure MALDI", J. Am. Soc. Mass Spectrom. (2006), 17(7), 1005-1013.
B1. V. Gabelica, E. De Pauw, “Internal Energy and Fragmentation of Ions Produced in Electrospray Sources”, Mass Spectrom. Rev. (2005), 24, 566-587.
A23. A. Louati, R. Vataj, V. Gabelica, M. Lejeune, D. Matt, “Formation of upper rim acylated calix[4]arenes using a sacrificial zinc anode", Tetrahedron Lett. (2005), 46, 7499-7502.
A22. L. Guittat, A. De Cian, F. Rosu, V. Gabelica, E. De Pauw, E. Delfourne, J.-L. Mergny, “Ascididemin and meridine stabilise G-quadruplexes and inhibit telomerase in vitro", Biochim. Biophys. Acta (2005), 1724, 375-384.
A21. V. Gabelica, F. Rosu, M. Witt, G. Baykut, E. De Pauw, “Fast gas-phase H/D exchange observed for a G-quadruplex DNA”, Rapid Commun. Mass Spectrom. (2005), 19, 201-208.
A20. V. Henrotte, S. Laurent, V. Gabelica, L. Van der Elst, E. De Pauw, R.N. Muller, “Investigation of non-covalent interactions between paramagnetic complexes and human serum albumin by electrospray mass spectrometry”, Rapid Commun. Mass Spectrom. (2004), 18, 1919-1924.
A19. V. Gabelica, E. Schulz, M. Karas, “Internal Energy build-up in matrix-assisted laser desorption/ionization”, J. Mass Spectrom. (2004), 39, 579-593.
A18. V. Gabelica, E. De Pauw, M. Karas, “Influence of the capillary temperature and the source pressure on the internal energy distribution of electrosprayed ions”, Int. J. Mass Spectrom. (2004), 231, 189-195.
A17. F. Rosu, V. Gabelica, K. Shin-ya, E. De Pauw, “Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry”, Chem. Commun. (2003), 2072-2073.
A16. V. Gabelica, M. Karas, E. De Pauw, “Calibration of ion effective temperatures achieved by resonant activation in a quadrupole ion trap”, Anal. Chem. (2003), 75, 5152-5159.
A15. J.F. Greisch, V. Gabelica, F. Remacle, E. De Pauw, “Thermometer ions for matrix-enhanced laser desorption/ionisation internal energy calibration”, Rapid Commun. Mass Spectrom. (2003), 17, 1847-1854.
A14. L. Guittat, P. Alberti, F. Rosu, S. Van Miert, E. Thetiot, L. Pieters, V. Gabelica, E. De Pauw, A. Ottaviani, J.-F. Riou, J.-L. Mergny, “Interactions of cryptolepine and neocryptolepine with unusual DNA structures”, Biochimie (2003), 85, 535-547. (issue cover)
A13. V. Gabelica, N. Galic, F. Rosu, C. Houssier, E. De Pauw, “Influence of response factors on determining equilibrium association constants of non-covalent complexes by electrospray ionization mass spectrometry”, J. Mass Spectrom., (2003), 38, 491-501.
A12. C. Carrasco, F. Rosu, V. Gabelica, C. Houssier, E. De Pauw, C. Garbay-Jaureguiberry, B. Roques, D. W. Wilson, J. B. Chaires, M. J. Waring, C. Bailly, “Tight binding of the antitumor drug ditercalinium to quadruplex DNA”, ChemBioChem., (2002), 3, 1235-1241.
A11. F. Rosu, V. Gabelica, P. Colson, E. De Pauw, “Triplex and Quadruplex DNA Structures Studied by Electrospray Mass Spectrometry”, Rapid Commun. Mass Spectrom., (2002) 16, 1729-1736.
A10. V. Gabelica, C. Vreuls, P. Filée, V. Duval, B. Joris, E. De Pauw, “Advantages and Drawbacks of Nanospray for Studying Noncovalent Protein-DNA Complexes by Mass Spectrometry”, Rapid Commun. Mass Spectrom., (2002) 16, 1723-1728.
A9. F. Rosu, V. Gabelica, C. Houssier, E. De Pauw, “Determination of Affinity, Stoichiometry and Sequence Selectivity of Minor Groove Binder Complexes with Double-Stranded Oligodeoxynucleotides by Electrospray Ionization Mass Spectrometry”, Nucleic Acids Res. (2002) 30, e82 (9 pages).
A8. V. Gabelica, N. Galic, E. De Pauw, “On the Specificity of Cyclodextrin Complexes Detected by Electrospray Mass Spectrometry”, J. Am. Soc. Mass Spectrom. (2002) 13, 946-953.
A7. V. Gabelica, E. De Pauw, “Collision-induced dissociation of 16-mer DNA duplexes with various sequences: evidence for conservation of the double helix conformation in the gas phase”, Int. J. Mass Spectrom. (2002) 219, 151-159.
A6. R. Vastaj, H. Ridaoui, A. Louati, V. Gabelica, S. Steyer, D. Matt, “First synthesis of “1,2-diquinone-calix[4]arene”. Interaction of its reduced form with Ag+”, J. Electroanal. Chem. (2002) 519, 123-129.
A5. V. Gabelica, E. De Pauw, “Comparison of the Collision-Induced Dissociation of Duplex DNA at Different Collision Regimes: Evidence for a Multistep Dissociation Mechanism”, J. Am. Soc. Mass Spectrom. (2002) 13, 91-98.
A4. V. Gabelica, D. Lemaire, O. Laprévote, E. De Pauw, “Kinetics of Solvent Addition on Electrosprayed Ions in an Electrospray Source and in a Quadrupole Ion Trap”, Int. J. Mass Spectrom. (2001) 210/211, 113-119.
A3. V. Gabelica, E. De Pauw, “Comparison between Solution Phase Stability and Gas Phase Kinetic Stability of Oligodeoxynucleotide Duplexes”, J. Mass Spectrom. (2001) 36(4), 397-402.
A2. V. Gabelica, F. Rosu, C. Houssier, E. De Pauw “Gas Phase Thermal Denaturation of Oligonucleotide Duplex and Complexes with Minor Groove Binders”, Rapid Commun. Mass Spectrom. (2000) 14(6), 464-467.
A1. V. Gabelica, E. De Pauw, F. Rosu, “The Interaction between Antitumor Drugs and a Double-stranded Oligonucleotide Studied by Electrospray Ionization Mass Spectrometry”, J. Mass. Spectrom (1999). 34(12), 1328-1337.